Issue 133: [pNovo] Less number of predictions than input spectra - pFind Forum

Title	[pNovo] Less number of predictions than input spectra
Priority	question	Status	finished
Superseder		Nosy List	irleader, jinyangl
Assigned To		Keywords	pNovo

Created on 2023-05-19.18:09:28 by irleader, last changed by jinyangl.

Messages
msg354 (view)	Author: jinyangl	Date: 2023-05-25.15:42:26
Hi irleader, pNovo has a mass filter function. Only precursors within 300-3500 Da mass window will be sequenced. I think these missing predictions outranged the mass window.
msg353 (view)	Author: irleader	Date: 2023-05-19.18:09:28
I input 34212 sepctra with several mgf files. Finally, it displays 33935 predicitons, among the 33935 predictions, 32607 predictions have valid sequences, others (33935-32607=1328) are nan. I understand that due to precursor/fragment tolerance and PTMs, there will be spectra without any valid prediction sequences,which shows nan (the 1328 predictions). However, why only 33935 predictions are displayed when 34212 spectra are input? What happened to the missing predictions?

History
Date	User	Action	Args
2023-07-11 21:01:40	jinyangl	set	status: chatting -> finished title: [pNovo3]Less number of predictions than input spectra -> [pNovo] Less number of predictions than input spectra
2023-05-25 15:42:28	jinyangl	set	status: unread -> chatting messages: + msg354 nosy: + jinyangl
2023-05-19 18:09:29	irleader	create