Issue 169: pFind results were removed automatically - pFind Forum

Title	pFind results were removed automatically
Priority	urgent	Status	finished
Superseder		Nosy List	Jiaxiang, Stu.Zhang
Assigned To	Jiaxiang	Keywords

Created on 2024-06-02.19:56:50 by Stu.Zhang, last changed by Stu.Zhang.

Messages
msg429 (view)	Author: Stu.Zhang	Date: 2024-06-03.22:42:00
Yes, I finally found out that my hardware disk was broken, it's not the fault of pFind. Thanks very much!
msg428 (view)	Author: Jiaxiang	Date: 2024-06-03.11:15:27
Hello, pfind can directly analyze raw files without using MSConvert to convert them to MGF format. You can directly select the type RAW in MS Data Format.
msg426 (view)	Author: Stu.Zhang	Date: 2024-06-02.19:56:50
[E:\pFind\20240601\HCl-OS-SixFrame-UniProt\ : start from Data Extraction] Process 1: Process 2: Process 1: ******************************************* Process 2: ***************************************** Process 1: / pParse2.0 (x64) from pFind Studio \ Process 2: / pParse2.0 (x64) from pFind Studio \ Process 1: / Email : pfind@ict.ac.cn \ Process 2: / Email : pfind@ict.ac.cn \ Process 1: \ Website: http://pfind.ict.ac.cn / Process 2: \ Website: http://pfind.ict.ac.cn / Process 1: ***************************************** Process 2: ***************************************** Process 1: Process 2: Process 1: The license will expire in 2100-1-1 Process 2: The license will expire in 2100-1-1 Process 1: [pParse] <INFO> - --------- BEGIN PARAMETERS ----------- Process 2: [pParse] <INFO> - --------- BEGIN PARAMETERS ----------- Process 1: [pParse] <INFO> - 01: check_activationcenter = 1 Process 2: [pParse] <INFO> - 01: check_activationcenter = 1 Process 1: [pParse] <INFO> - 02: co-elute = 1 Process 2: [pParse] <INFO> - 02: co-elute = 1 Process 1: [pParse] <INFO> - 03: cut_similiar_mono = 1 Process 2: [pParse] <INFO> - 03: cut_similiar_mono = 1 Process 1: [pParse] <INFO> - 04: datanum = 2 Process 2: [pParse] <INFO> - 04: datanum = 1 Process 1: [pParse] <INFO> - 05: datapath1 = E:\OE480_raw_data\20240318ZXQ\1.mgf Process 2: [pParse] <INFO> - 05: datapath1 = E:\OE480_raw_data\20240318ZXQ\6.mgf Process 1: [pParse] <INFO> - 06: datapath2 = E:\OE480_raw_data\20240318ZXQ\3.mgf Process 2: [pParse] <INFO> - 06: delete_msn = 0 Process 1: [pParse] <INFO> - 07: delete_msn = 0 Process 2: [pParse] <INFO> - 07: input_format = mgf Process 1: [pParse] <INFO> - 08: input_format = mgf Process 2: [pParse] <INFO> - 08: intensity = 1 Process 1: [pParse] <INFO> - 09: intensity = 1 Process 2: [pParse] <INFO> - 09: ipv_file = .\IPV.txt Process 1: [pParse] <INFO> - 10: ipv_file = .\IPV.txt Process 2: [pParse] <INFO> - 10: isolation_width = 2.000000 Process 1: [pParse] <INFO> - 11: isolation_width = 2.000000 Process 2: [pParse] <INFO> - 11: logfilepath = E:\OE480_raw_data\20240318ZXQ\.proc2 Process 1: [pParse] <INFO> - 12: logfilepath = E:\OE480_raw_data\20240318ZXQ\.proc1 Process 2: [pParse] <INFO> - 12: m/z = 5 Process 1: [pParse] <INFO> - 13: m/z = 5 Process 2: [pParse] <INFO> - 13: mars_model = 4 Process 1: [pParse] <INFO> - 14: mars_model = 4 Process 2: [pParse] <INFO> - 14: mars_threshold = -0.500000 Process 1: [pParse] <INFO> - 15: mars_threshold = -0.500000 Process 2: [pParse] <INFO> - 15: mstol = 20.000000 Process 1: [pParse] <INFO> - 16: mstol = 20.000000 Process 2: [pParse] <INFO> - 16: mstolppm = 1 Process 1: [pParse] <INFO> - 17: mstolppm = 1 Process 2: [pParse] <INFO> - 17: output_mgf = 1 Process 1: [pParse] <INFO> - 18: output_mgf = 1 Process 2: [pParse] <INFO> - 18: output_msb = 0 Process 1: [pParse] <INFO> - 19: output_msb = 0 Process 2: [pParse] <INFO> - 19: output_pf = 1 Process 1: [pParse] <INFO> - 20: output_pf = 1 Process 2: [pParse] <INFO> - 20: outputpath = Process 1: [pParse] <INFO> - 21: outputpath = Process 2: [pParse] <INFO> - 21: recalibrate_window = 7.000000 Process 1: [pParse] <INFO> - 22: recalibrate_window = 7.000000 Process 2: [pParse] <INFO> - 22: rewrite_files = 0 Process 1: [pParse] <INFO> - 23: rewrite_files = 0 Process 2: [pParse] <INFO> - --------- END PARAMETERS ------------- Process 1: [pParse] <INFO> - --------- END PARAMETERS ------------- Process 2: [pParse] <INFO> - pParse writes logs in E:\OE480_raw_data\20240318ZXQ\.proc2\pParsePlusLog.txt Process 1: [pParse] <INFO> - pParse writes logs in E:\OE480_raw_data\20240318ZXQ\.proc1\pParsePlusLog.txt Process 2: [pParse] <INFO> - E:\OE480_raw_data\20240318ZXQ\6.mgf has existed results, skipping... Process 1: [pParse] <INFO> - E:\OE480_raw_data\20240318ZXQ\1.mgf has existed results, skipping... Process 2: [pParse] <INFO> - == == == Time elapsed: 0 seconds. == == == = Process 1: [pParse] <INFO> - E:\OE480_raw_data\20240318ZXQ\3.mgf has existed results, skipping... [pFind] ######################################### [pFind] # # [pFind] # Welcome to use pFind search engine! # [pFind] # # [pFind] # version 3.2.0 # [pFind] # # [pFind] # http://pfind.org # [pFind] # # [pFind] ######################################### [pFind] Fasta path: H:\libraries\Six_frame_Uniprot_combined_con.fasta [pFind] MSMS path: E:\OE480_raw_data\20240318ZXQ\1.mgf [pFind] <Search 1> Round: 1 / 0 [pFind] <Search 1>: 100% [pFind] Search time: 3.06 [pFind] <Protein Infer> Inferring proteins... [pFind] <Protein Infer> Inferring proteins completed. [pFind] <Rerank>: 100% [pFind] <Search 2> Round: 1 / 0 [pFind] <Search 2>: 100% [pFind] Time Used: 0.35. [pFind] <Protein Infer> Inferring proteins... [pFind] <Protein Infer> Inferring proteins completed. [pFind] <Rerank>: 100% [pFind] MSMS path: E:\OE480_raw_data\20240318ZXQ\3.mgf [pFind] <Search 1> Round: 1 / 0 [pFind] <Search 1>: 100% [pFind] Search time: 1.69 [pFind] <Protein Infer> Inferring proteins... [pFind] <Protein Infer> Inferring proteins completed. [pFind] <Rerank>: 100% [pFind] <Search 2> Round: 1 / 0 [pFind] <Search 2>: 100% [pFind] Time Used: 0.34. [pFind] <Protein Infer> Inferring proteins... [pFind] <Protein Infer> Inferring proteins completed. [pFind] <Rerank>: 100% [pFind] MSMS path: E:\OE480_raw_data\20240318ZXQ\6.mgf [pFind] <Search 1> Round: 1 / 0 [pFind] <Search 1>: 100% [pFind] Search time: 1.91 [pFind] <Protein Infer> Inferring proteins... [pFind] <Protein Infer> Inferring proteins completed. [pFind] <Rerank>: 100% [pFind] <Search 2> Round: 1 / 0 [pFind] <Search 2>: 100% [pFind] Time Used: 0.38. [pFind] <Protein Infer> Inferring proteins... [pFind] <Protein Infer> Inferring proteins completed. [pFind] <Rerank>: 100% [pFind] == == == Total Time elapsed of Identification: 32.5 seconds. == == == [pFind] <Filter By FDR> Initialize... [pFind] <Filter By FDR> TDA started... [pFind] <Filter By FDR> TDA completed. Overall ID Rate: 0 / 0 = nan% [pFind] == == == Total Time elapsed of Filter: 1.9 seconds. == == == *******Total Time: 34.72********* == == == == == Total Time Used for This Task: 00:00:35 == == == == == Hello, professors! I was trying to analyze my LC-MS/MS data on pFind, firstly I converted the .raw data into .mgf by MSConvert, and then I ran pFind and got the results, but I don't know from when the result folders were removed automatically. And when I tried to reanalyze the data on pFind, there seemed to be some problems, and the analyze was exited with an "error" notice on pBuild as I posted above. Can you help me see where was wrong?

History
Date	User	Action	Args
2024-06-03 22:42:02	Stu.Zhang	set	status: chatting -> finished messages: + msg429
2024-06-03 11:15:28	Jiaxiang	set	status: evaluating -> chatting assignedto: Jiaxiang messages: + msg428 nosy: + Jiaxiang
2024-06-02 19:56:52	Stu.Zhang	create