Title [pLink] Slow loading spectra and "not enough spaces to infer proteins"
Priority question Status finished
Superseder Nosy List Rebennion, ctarn
Assigned To ctarn Keywords

Created on 2021-11-12.10:21:28 by Rebennion, last changed by ctarn.

File name Uploaded Type Edit Remove
WhatsApp Image 2021-11-12 at 08.43.51.jpeg Rebennion, 2021-11-12.10:21:28 image/jpeg
WhatsApp Image 2021-11-12 at 08.44.49.jpeg Rebennion, 2021-11-12.10:22:50 image/jpeg
msg143 (view) Author: ctarn Date: 2021-11-16.00:20:16
Hi. I also noticed that the database you used may be too large. Could you please try 
it with a smaller fasta db? You can also attached your configuration file here so 
that we can check it further. The configuration file ends with the “.plink” 
extension and can be found in the task folder.
msg142 (view) Author: ctarn Date: 2021-11-16.00:14:08
Hi. pLink should be terminated already. Please try to run the task in command line 
mode and send us the output. Please refer to issue 8.
msg141 (view) Author: ctarn Date: 2021-11-15.20:29:52
Hi. Thanks for reaching out. In most cases pLink would not take nearly a month to 
complete a searching task. And pLink may terminated already due to lacking of 
sufficient memory. You may need to run the task on some other computer with more 
msg140 (view) Author: Rebennion Date: 2021-11-12.10:21:28

pLink has been running for nearly a month now. I am doing a search for 
(C)IodoTMT peptides in 10 raw files. It has been very slow and doesn't seem to 
be using much of the computer's RAM or CPU power. Loading spectra is very slow 
and then there are some more delays where it says "not enough spaces to infer 
proteins"- what does this mean? 

Is there a way that this can be made to run faster?

This run is just an optimisation experiment, so I worry when I try to search the 
final experiment with repeats it will take several months. 

Thanks in advance for your help.
Date User Action Args
2021-11-23 13:47:03ctarnsetstatus: chatting -> finished
2021-11-16 00:20:19ctarnsetmessages: + msg143
2021-11-16 00:14:11ctarnsetmessages: + msg142
2021-11-15 20:29:56ctarnsetassignedto: ctarn
messages: + msg141
status: unread -> chatting
nosy: + ctarn
2021-11-12 10:24:57Rebennionsetpriority: feature -> question
2021-11-12 10:22:50Rebennionsetfiles: + WhatsApp Image 2021-11-12 at 08.44.49.jpeg
2021-11-12 10:21:36Rebennioncreate