Issue 55: Issue with process

Title	Issue with process
Priority	urgent	Status	archived
Superseder	[pGlyco] pGlyco3 output fields View: 31	Nosy List
Assigned To	zhiyuewu@tmu.edu.cn	Keywords	pGlyco
Created on 2021-12-30.15:28:46 by Glycan009, last changed by ctarn.
msg149 (view)
Author: Glycan009
Date: 2021-12-30.15:28:46
[pGlyco] Starting task ... 
Process 1: ID=22056
Process ID=22056: C:\Users\Admin\Desktop\pGlyco3.0_build20210615\bin>rem 
*************************************************** 
Process ID=22056: 
C:\Users\Admin\Desktop\pGlyco3.0_build20210615\bin>parse_raw.exe "D:\iisc" 
Process ID=22056: [14516] Failed to execute script parse_raw
Process ID=22056: Traceback (most recent call last):
Process ID=22056:   File "parse_raw.py", line 160, in <module>
Process ID=22056:   File "parse_raw.py", line 95, in __init__
Process ID=22056:   File "pGlyco_config.py", line 48, in __init__
Process ID=22056:   File "pGlyco_config.py", line 76, in read_cfg
Process ID=22056: FileNotFoundError: [Errno 2] No such file or directory: 
'D:\\iisc'
Process ID=22056: 
C:\Users\Admin\Desktop\pGlyco3.0_build20210615\bin>pGlycoDB.exe "D:\iisc" 
Process ID=22056: *****************************************************
Process ID=22056: *                                                   *
Process ID=22056: *              * Welcome to pGlyco3 *               *
Process ID=22056: *                                                   *
Process ID=22056: *               * pglyco@ict.ac.cn *                *
Process ID=22056: *                                                   *
Process ID=22056: *****************************************************
Process ID=22056: [pGlyco] pGlyco software will be expired in 2024/01/01
Process ID=22056: [pGlyco Error] ReadConfig() in BasicIOFunction.cpp: could not 
open D:\iisc
Process ID=22056: 
C:\Users\Admin\Desktop\pGlyco3.0_build20210615\bin>gpPercolator.exe -p "D:\iisc" 
Process ID=22056: [10796] Failed to execute script percolator
Process ID=22056: Traceback (most recent call last):
Process ID=22056:   File "percolator.py", line 337, in <module>
Process ID=22056:   File "pGlyco_config.py", line 48, in __init__
Process ID=22056:   File "pGlyco_config.py", line 76, in read_cfg
Process ID=22056: FileNotFoundError: [Errno 2] No such file or directory: 
'D:\\iisc'
Process ID=22056: 
C:\Users\Admin\Desktop\pGlyco3.0_build20210615\bin>pGlycoFDR.exe -p "D:\iisc" 
Process ID=22056: [10392] Failed to execute script pGlycoFDR
Process ID=22056: Traceback (most recent call last):
Process ID=22056:   File "pGlycoFDR.py", line 358, in <module>
Process ID=22056:   File "pGlyco_config.py", line 48, in __init__
Process ID=22056:   File "pGlyco_config.py", line 76, in read_cfg
Process ID=22056: FileNotFoundError: [Errno 2] No such file or directory: 
'D:\\iisc'
Process ID=22056: 
C:\Users\Admin\Desktop\pGlyco3.0_build20210615\bin>pGlycoProInfer.exe -p 
"D:\iisc" 
Process ID=22056: [8228] Failed to execute script pGlycoProInfer
Process ID=22056: Traceback (most recent call last):
Process ID=22056:   File "pGlycoProInfer.py", line 162, in <module>
Process ID=22056:   File "pGlyco_config.py", line 48, in __init__
Process ID=22056:   File "pGlyco_config.py", line 76, in read_cfg
Process ID=22056: FileNotFoundError: [Errno 2] No such file or directory: 
'D:\\iisc'
Process ID=22056: C:\Users\Admin\Desktop\pGlyco3.0_build20210615\bin>XIC.exe -p 
"D:\iisc" 
Process ID=22056: [18632] Failed to execute script XIC
Process ID=22056: Traceback (most recent call last):
Process ID=22056:   File "XIC.py", line 448, in <module>
Process ID=22056:   File "XIC.py", line 82, in __init__
Process ID=22056:   File "pGlyco_config.py", line 48, in __init__
Process ID=22056:   File "pGlyco_config.py", line 76, in read_cfg
Process ID=22056: FileNotFoundError: [Errno 2] No such file or directory: 
'D:\\iisc'
Process ID=22056: [XIC] Smoothing window = 21
Process ID=22056: [XIC] Smoothing method = savgol_filter
Process ID=22056: 
C:\Users\Admin\Desktop\pGlyco3.0_build20210615\bin>pGlycoSite.exe "D:\iisc" 
Process ID=22056: Already registered!
Process ID=22056: Unhandled Exception: System.IO.FileNotFoundException: Could 
not find file 'D:\iisc'.
Process ID=22056:    at System.IO.__Error.WinIOError(Int32 errorCode, String 
maybeFullPath)
Process ID=22056:    at System.IO.FileStream.Init(String path, FileMode mode, 
FileAccess access, Int32 rights, Boolean useRights, FileShare share, Int32 
bufferSize, FileOptions options, SECURITY_ATTRIBUTES secAttrs, String msgPath, 
Boolean bFromProxy, Boolean useLongPath, Boolean checkHost)
Process ID=22056:    at System.IO.FileStream..ctor(String path, FileMode mode, 
FileAccess access, FileShare share, Int32 bufferSize, FileOptions options, 
String msgPath, Boolean bFromProxy, Boolean useLongPath, Boolean checkHost)
Process ID=22056:    at System.IO.StreamReader..ctor(String path, Encoding 
encoding, Boolean detectEncodingFromByteOrderMarks, Int32 bufferSize, Boolean 
checkHost)
Process ID=22056:    at System.IO.StreamReader..ctor(String path, Encoding 
encoding)
Process ID=22056:    at System.IO.File.InternalReadAllLines(String path, 
Encoding encoding)
Process ID=22056:    at pGlycoConfig.Parameter.ReadCFG(String cfg)
Process ID=22056:    at pGlycoSite.pGlycoSite..ctor(String cfg)
Process ID=22056:    at pGlycoSite.Program.Main(String[] args)
[pGlyco] <Error> File D:\iisc users\RV\Suhail\pGly3\process1\pGlycoDB-GP-FDR.txt 
does not exist!
[pGlyco] <Error> File D:\iisc users\RV\Suhail\pGly3\process1\pGlycoDB-GP-FDR-
Pro.txt does not exist!
[pGlyco] <Error> File D:\iisc users\RV\Suhail\pGly3\process1\pGlycoDB-GP-FDR-
Pro-Quant.txt does not exist!
[pGlyco] <Error> File D:\iisc users\RV\Suhail\pGly3\process1\pGlycoDB-GP-FDR-
Pro-Quant-Site.txt does not exist!
[pGlyco] All results are merged!
[pGlyco] Running time = 0.1 minutes.
[pGlyco] Task completed!
History
Date	User	Action	Args
2022-01-05 15:14:29	ctarn	set	status: unread -> archived nosy: - wangrui@szbl.ac.cn, hchi, lonelu, pzmao, zhiyuewu@tmu.edu.cn, weizhuohong, zhouwenjing, jinyangl, zcfei, rachelwinter, Glycan009, kfwang, hmin
2021-12-30 15:28:53	Glycan009	create
Issue55
