Issue73

Title [pXtract] ERROR when extracting raw files
Priority FAQ Status finished
Superseder Nosy List ctarn, jinyangl
Assigned To ctarn Keywords

Created on 2022-04-05.13:10:11 by jinyangl, last changed by jinyangl.

Files
File name Uploaded Type Edit Remove
pParsePlusLog.txt jinyangl, 2022-04-05.13:10:11 text/plain
Messages
msg207 (view) Author: jinyangl Date: 2022-04-08.09:31:36
Thanks, pXtract runs well after download the RAW files again.
msg206 (view) Author: ctarn Date: 2022-04-06.14:32:46
Hi, the RAW file may have been corrupted during the download (or copy). Please check 
the file or try to download (copy) it again.
msg202 (view) Author: jinyangl Date: 2022-04-05.13:10:11
Hi there, I got stuck when trying to use pFind to search some raw files. The 
error occured in the extraction step:

Process 2: [pXtract] <INFO> - Try to generate new rawinfo.
Process 2: [pXtract] <ERROR> - GetInstrumentData
Process 2: [pXtract] <ERROR> -    在 
ThermoFisher.CommonCore.RawFileReader.RawFileAccessBase.RequireDevice(String 
reason)
Process 2:    在 
ThermoFisher.CommonCore.RawFileReader.RawFileAccessBase.GetInstrumentData()
Process 2:    在 Xtract.RawExtractor.ParseInstrumentData()
Process 2:    在 Xtract.RawExtractor.Extract()
Process 2:    在 Xtract.Program.Main(String[] args)
Process 2: [pParse] <EXIT> - pParse has encountered a problem and will exit.
Process 2:  You can send your pParsePlusLog.txt to pparse@ict.ac.cn for help.

The file is 20141202_QEp8_KiSh_SA_Cerebellum_P14_Singleshot2.raw downloaded from 
https://www.ebi.ac.uk/pride/archive/projects/PXD001250. The other three raw 
files behaves normally, and I'm not sure if this has relations to the raw file. 
When I try to run pFind again, the error still exists. The log file of pParse is 
attached below.

Maybe this question is the same as Issue62.

Thanks,
Jinyang Li
History
Date User Action Args
2022-04-08 09:31:40jinyanglsetstatus: chatting -> finished
messages: + msg207
2022-04-06 14:32:49ctarnsetmessages: + msg206
status: unread -> chatting
2022-04-06 10:10:14kfwangsetassignedto: ctarn
priority: bug -> FAQ
nosy: + ctarn
2022-04-05 13:10:14jinyanglcreate