Issue86

Title [pFind]<EXIT>
Priority FAQ Status finished
Superseder Nosy List hahaz, kfwang
Assigned To kfwang Keywords pParse

Created on 2022-06-28.11:58:12 by hahaz, last changed by kfwang.

Messages
msg245 (view) Author: kfwang Date: 2022-07-02.23:40:24
Dear, you can try using MSConvert 
(https://proteowizard.sourceforge.io/tools/msconvert.html)to convert these files to 
MGF format for searching.
msg244 (view) Author: kfwang Date: 2022-07-01.13:55:39
Please check the operation, you need to unzip all the files after downloading the 
pParse into the bin folder of the pFind installation directory, (about 42 overwritten 
files).
msg243 (view) Author: hahaz Date: 2022-06-29.20:28:39
Thanks sincerely for your support,while I encountered another trouble after 
downloading pParse.
[D:\pFindWorkspace\pFindTask2\ : start from Data Extraction]

Process 1: 
Process 1: 	  *********************************************
Process 1: 	 /       pParse2.0 (x64) from pFind Studio     \
Process 1: 	/        Email  :  pfind@ict.ac.cn              \
Process 1: 	\        Website:  http://pfind.ict.ac.cn       /
Process 1: 	  *********************************************
Process 1: 
Process 1: The license will expire in 2100-1-1
Process 1: [pParse] <INFO> - --------- BEGIN PARAMETERS -----------
Process 1: [pParse] <INFO> - 01: check_activationcenter = 1
Process 1: [pParse] <INFO> - 02: co-elute = 1
Process 1: [pParse] <INFO> - 03: cut_similiar_mono = 1
Process 1: [pParse] <INFO> - 04: datanum = 1
Process 1: [pParse] <INFO> - 05: datapath1 = E:\DATA\Synapt\Data\20220625-
Lyso\20220625-Lyso-PH7-IAld.mzML
Process 1: [pParse] <INFO> - 06: delete_msn = 0
Process 1: [pParse] <INFO> - 07: input_format = mzml
Process 1: [pParse] <INFO> - 08: intensity = 1
Process 1: [pParse] <INFO> - 09: ipv_file = .\IPV.txt
Process 1: [pParse] <INFO> - 10: isolation_width = 2.000000
Process 1: [pParse] <INFO> - 11: logfilepath = E:\DATA\Synapt\Data\20220625-
Lyso\.proc1
Process 1: [pParse] <INFO> - 12: m/z = 5
Process 1: [pParse] <INFO> - 13: mars_model = 4
Process 1: [pParse] <INFO> - 14: mars_threshold = -0.500000
Process 1: [pParse] <INFO> - 15: mstol = 20.000000
Process 1: [pParse] <INFO> - 16: mstolppm = 1
Process 1: [pParse] <INFO> - 17: output_mgf = 1
Process 1: [pParse] <INFO> - 18: output_msb = 0
Process 1: [pParse] <INFO> - 19: output_pf = 1
Process 1: [pParse] <INFO> - 20: outputpath = 
Process 1: [pParse] <INFO> - 21: recalibrate_window = 7.000000
Process 1: [pParse] <INFO> - 22: rewrite_files = 0
Process 1: [pParse] <INFO> - --------- END PARAMETERS -------------
Process 1: [pParse] <INFO> - pParse writes logs in E:\DATA\Synapt\Data\20220625-
Lyso\.proc1\pParsePlusLog.txt
Process 1: [pParse] <INFO> - .\xtract_xml.exe -ms -a -i 1 -m 5 -o 
"E:\DATA\Synapt\Data\20220625-Lyso" "E:\DATA\Synapt\Data\20220625-Lyso\20220625-
Lyso-PH7-IAld.mzML"
Process 1: [pXtract] <ERROR> - Sorry, the license has expired.
Process 1: [pXtract] <Exception>: Please visit http://pfind.ict.ac.cn/ and 
download the newest version.
Process 1: [pXtract] <ERROR> -    在 Xtract.Program.TimeControl()
Process 1:    在 Xtract.Program.Main(String[] args)
Process 1: [pParse] <EXIT> - pParse has encountered a problem and will exit.
Process 1:  You can send your pParsePlusLog.txt to pparse@ict.ac.cn for help.
[pFind] ALERT: Invalid_msmspath1_Path: [E:\DATA\Synapt\Data\20220625-
Lyso\20220625-Lyso-PH7-IAld_CIDFT.pf2]
msg242 (view) Author: kfwang Date: 2022-06-28.20:36:47
Dear, please download the new version of pParse from 
http://pfind.org/software/pParse/index.html and extract it to the bin folder of the 
pFind installation directory.

Kaifei
msg241 (view) Author: hahaz Date: 2022-06-28.11:58:12
[D:\pFindWorkspace\pFindTask2\ : start from Data Extraction]

Process 1: 
Process 1: 	  *********************************************
Process 1: 	 /       pParse2.0 (x64) from pFind Studio     \
Process 1: 	/        Email  :  pfind@ict.ac.cn              \
Process 1: 	\        Website:  http://pfind.ict.ac.cn       /
Process 1: 	  *********************************************
Process 1: 
Process 1: The license will expire in 2100-1-1
Process 1: [pParse] <INFO> - --------- BEGIN PARAMETERS -----------
Process 1: [pParse] <INFO> - 01: check_activationcenter = 1
Process 1: [pParse] <INFO> - 02: co-elute = 1
Process 1: [pParse] <INFO> - 03: cut_similiar_mono = 1
Process 1: [pParse] <INFO> - 04: datanum = 1
Process 1: [pParse] <INFO> - 05: datapath1 = E:\DATA\SYNAPT-G2-Si-spectrum\Raw-
data\convert-mzML\202206024-RNase-CON1.mzML
Process 1: [pParse] <INFO> - 06: delete_msn = 0
Process 1: [pParse] <INFO> - 07: input_format = mzml
Process 1: [pParse] <INFO> - 08: intensity = 1
Process 1: [pParse] <INFO> - 09: ipv_file = .\IPV.txt
Process 1: [pParse] <INFO> - 10: isolation_width = 2.000000
Process 1: [pParse] <INFO> - 11: logfilepath = E:\DATA\SYNAPT-G2-Si-
spectrum\Raw-data\convert-mzML\.proc1
Process 1: [pParse] <INFO> - 12: m/z = 5
Process 1: [pParse] <INFO> - 13: mars_model = 4
Process 1: [pParse] <INFO> - 14: mars_threshold = -0.500000
Process 1: [pParse] <INFO> - 15: mstol = 20.000000
Process 1: [pParse] <INFO> - 16: mstolppm = 1
Process 1: [pParse] <INFO> - 17: output_mgf = 1
Process 1: [pParse] <INFO> - 18: output_msb = 0
Process 1: [pParse] <INFO> - 19: output_pf = 1
Process 1: [pParse] <INFO> - 20: outputpath = 
Process 1: [pParse] <INFO> - 21: recalibrate_window = 7.000000
Process 1: [pParse] <INFO> - 22: rewrite_files = 0
Process 1: [pParse] <INFO> - --------- END PARAMETERS -------------
Process 1: [pParse] <INFO> - pParse writes logs in E:\DATA\SYNAPT-G2-Si-
spectrum\Raw-data\convert-mzML\.proc1\pParsePlusLog.txt
Process 1: [pParse] <INFO> - .\xtract_xml.exe -ms -a -i 1 -m 5 -o 
"E:\DATA\SYNAPT-G2-Si-spectrum\Raw-data\convert-mzML" "E:\DATA\SYNAPT-G2-Si-
spectrum\Raw-data\convert-mzML\202206024-RNase-CON1.mzML"
Process 1: [pXtract] <ERROR> - Sorry, the license has expired.
Process 1: [pXtract] <Exception>: Please visit http://pfind.ict.ac.cn/ and 
download the newest version.
Process 1: [pXtract] <ERROR> -    在 Xtract.Program.TimeControl()
Process 1:    在 Xtract.Program.Main(String[] args)
Process 1: [pParse] <EXIT> - pParse has encountered a problem and will exit.
History
Date User Action Args
2022-08-09 11:28:14kfwangsetstatus: chatting -> finished
2022-07-02 23:40:25kfwangsetmessages: + msg245
2022-07-01 13:55:40kfwangsetmessages: + msg244
2022-06-29 20:28:41hahazsetkeyword: + pParse
title: [pFind] -> [pFind]<EXIT>
messages: + msg243
2022-06-28 20:37:51kfwangsetassignedto: kfwang
2022-06-28 20:36:49kfwangsetmessages: + msg242
status: unread -> chatting
nosy: + kfwang
2022-06-28 11:58:14hahazcreate